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Pathogenic variants in human DNA damage repair genes mostly arose in recent human history Journal article
Zhao, Bojin, Li, Jiaheng, Sinha, Siddharth, Qin, Zixin, Kou, Si Hoi, Xiao, Fengxia, Lei, Huijun, Chen, Tianhui, Cao, Wenming, Ding, Xiaofan, Wang, San Ming. Pathogenic variants in human DNA damage repair genes mostly arose in recent human history[J]. BMC Cancer, 2024, 24(1), 415.
Authors:  Zhao, Bojin;  Li, Jiaheng;  Sinha, Siddharth;  Qin, Zixin;  Kou, Si Hoi; et al.
Favorite | TC[WOS]:3 TC[Scopus]:3  IF:3.4/3.8 | Submit date：2024/05/16
Archaeological  Dna Damage Repair  Evolutionary Origin  Pathogenic Variants  Phylogenetic  
Classification of MLH1 Missense VUS Using Protein Structure-Based Deep Learning-Ramachandran Plot-Molecular Dynamics Simulations Method Journal article
Tam, Benjamin, Qin, Zixin, Zhao, Bojin, Sinha, Siddharth, Lei, Chon Lok, Wang, San Ming. Classification of MLH1 Missense VUS Using Protein Structure-Based Deep Learning-Ramachandran Plot-Molecular Dynamics Simulations Method[J]. International Journal of Molecular Sciences, 2024, 25(2), 850.
Authors:  Tam, Benjamin;  Qin, Zixin;  Zhao, Bojin;  Sinha, Siddharth;  Lei, Chon Lok; et al.
Favorite | TC[WOS]:3 TC[Scopus]:3  IF:4.9/5.6 | Submit date：2024/02/22
Autoencoder  Deep Learning  Mlh1  Molecular Dynamics Simulation  Neural Network  Ramachandran Plot  Vus  
An advanced strategy for quality evaluation of Xinyi Biyan Pill by UPLC-DAD fingerprinting combined with multi-components UPLC-MS/MS analysis Journal article
Lu, Yang, He, Zixin, Wang, Qin, Lei, Ting, Ning, Na, Chen, Xinyang, Wu, Xu, Wang, Shengpeng, Wan, Li, Cao, Jiliang. An advanced strategy for quality evaluation of Xinyi Biyan Pill by UPLC-DAD fingerprinting combined with multi-components UPLC-MS/MS analysis[J]. Journal of Pharmaceutical and Biomedical Analysis, 2023, 239, 115858.
Authors:  Lu, Yang;  He, Zixin;  Wang, Qin;  Lei, Ting;  Ning, Na; et al.
Favorite | TC[WOS]:2 TC[Scopus]:2  IF:3.1/3.1 | Submit date：2024/02/22
Chemical Characterization  Chemical Fingerprint  Multi-components Uplc-ms/ms Quantification  Quality Evaluation  Xinyi Biyan Pill  
Integration of deep learning with Ramachandran plot molecular dynamics simulation for genetic variant classification Journal article
Tam, Benjamin, Qin, Zixin, Zhao, Bojin, Wang, San Ming, Lei, Chon Lok. Integration of deep learning with Ramachandran plot molecular dynamics simulation for genetic variant classification[J]. ISCIENCE, 2023, 26(3), 106122.
Authors:  Tam, Benjamin;  Qin, Zixin;  Zhao, Bojin;  Wang, San Ming;  Lei, Chon Lok
Favorite | TC[WOS]:5 TC[Scopus]:5  IF:4.6/5.0 | Submit date：2023/04/03
Ethnic-specificity, evolution origin and deleteriousness of Asian BRCA variation revealed by over 7500 BRCA variants derived from Asian population Journal article
Qin, Zixin, Li, Jiaheng, Tam, Benjamin, Sinha, Siddharth, Zhao, Bojin, Bhaskaran, Shanmuga Priya, Huang, Teng, Wu, Xiaobing, Chian, Jia Sheng, Guo, Maoni, Kou, Si Hoi, Lei, Huijun, Zhang, Li, Wang, Xiaoyu, Lagniton, Philip Naderev P., Xiao, Fengxia, Jiang, Xinyang, Wang, San Ming. Ethnic-specificity, evolution origin and deleteriousness of Asian BRCA variation revealed by over 7500 BRCA variants derived from Asian population[J]. International Journal of Cancer, 2022, 152(6), 1159-1173.
Authors:  Qin, Zixin;  Li, Jiaheng;  Tam, Benjamin;  Sinha, Siddharth;  Zhao, Bojin; et al.
Favorite | TC[WOS]:5 TC[Scopus]:6  IF:5.7/6.0 | Submit date：2023/01/30
Asian  Brca1  Brca2  Cancer  Database  Evolution  Germline Variation  Population  Structure  Variation  
Distinct landscapes of deleterious variants in DNA damage repair system in ethnic human populations Journal article
Qin, Zixin, Huang, Teng, Guo, Maoni, Wang, San Ming. Distinct landscapes of deleterious variants in DNA damage repair system in ethnic human populations[J]. Life Science Alliance, 2022, 5(9), e202101319.
Authors:  Qin, Zixin;  Huang, Teng;  Guo, Maoni;  Wang, San Ming
Favorite | TC[WOS]:6 TC[Scopus]:6  IF:3.3/3.8 | Submit date：2022/08/02
Identification of deleterious variants of uncertain significance in BRCA2 BRC4 repeat through molecular dynamics simulations Journal article
Sinha, Siddharth, Qin, Zixin, Tam, Benjamin, Wang, San Ming. Identification of deleterious variants of uncertain significance in BRCA2 BRC4 repeat through molecular dynamics simulations[J]. Briefings in functional genomics, 2022, 21(3), 202-215.
Authors:  Sinha, Siddharth;  Qin, Zixin;  Tam, Benjamin;  Wang, San Ming
Favorite | TC[WOS]:4 TC[Scopus]:4  IF:2.5/3.4 | Submit date：2022/06/10
Brca2 Brc4  Auc  Deleterious  Molecular Dynamics Simulations  Pca  Roc  Tolerated  Vus Classification  
Ethnic-specific BRCA1/2 variation within Asia population: Evidence from over 78 000 cancer and 40 000 non-cancer cases of Indian, Chinese, Korean and Japanese populations Journal article
Shanmuga Priya Bhaskaran, Teng Huang, Barani Kumar Rajendran, Maoni Guo, Jiangtao Luo, Zixin Qin, Bojin Zhao, Jiasheng Chian, Suicheng Li, San Ming Wang. Ethnic-specific BRCA1/2 variation within Asia population: Evidence from over 78 000 cancer and 40 000 non-cancer cases of Indian, Chinese, Korean and Japanese populations[J]. Journal of Medical Genetics, 2021, 58(11), 752-759.
Authors:  Shanmuga Priya Bhaskaran;  Teng Huang;  Barani Kumar Rajendran;  Maoni Guo;  Jiangtao Luo; et al.
Favorite | TC[WOS]:26 TC[Scopus]:25  IF:3.5/4.1 | Submit date：2021/12/08
Dna Repair  Genetic Heterogeneity  Genetic Predisposition To Disease  Genetic Variation  Genetics  Medical  
Comprehensive identification of deleterious TP53 missense VUS variants based on their impact on TP53 structural stability Journal article
Benjamin Tam, Siddharth Sinha, Zixin Qin, San Ming Wang. Comprehensive identification of deleterious TP53 missense VUS variants based on their impact on TP53 structural stability[J]. International Journal of Molecular Sciences, 2021, 22(21), 11345.
Authors:  Benjamin Tam;  Siddharth Sinha;  Zixin Qin;  San Ming Wang
Favorite | TC[WOS]:7 TC[Scopus]:7 | Submit date：2021/12/08
Deleterious  Molecular Dynamic Simulations  Ramachandran Plot  Tp53  Vus  
Comparative genomics provides insights into the aquatic adaptations of mammals Journal article
Yuan, Yuan, Zhang, Yaolei, Zhang, Peijun, Liu, Chang, Wang, Jiahao, Gao, Haiyu, Rus Hoelzel, A., Seim, Inge, Lv, Meiqi, Lin, Mingli, Dong, Lijun, Gao, Haoyang, Yang, Zixin, Caruso, Francesco, Lin, Wenzhi, Da Fonseca, Rute R., Wang, Ding, Wang, Xianyan, Rasmussen, Marianne H., Liu, Mingming, Zheng, Jinsong, Zhao, Liyuan, Campos, Paula F., Kang, Hui, Iversen, Maria, Song, Yue, Guo, Xinyu, Guo, Jiao, Qin, Yating, Pan, Shanshan, Xu, Qiwu, Meng, Lingfeng, Yunga, A., Liu, Shanshan, Ming-Yuen Lee, Simon, Liu, Xin, Xu, Xun, Yang, Huanming, Fan, Guangyi, Wang, Kun, Li, Songhai. Comparative genomics provides insights into the aquatic adaptations of mammals[J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2021, 118(37), e2106080118.
Authors:  Yuan, Yuan;  Zhang, Yaolei;  Zhang, Peijun;  Liu, Chang;  Wang, Jiahao; et al.
Favorite | TC[WOS]:57 TC[Scopus]:57  IF:9.4/10.8 | Submit date：2021/12/08
Aquatic Adaptation  Comparative Genomics  Marine Mammals