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Chromosome-level genome assembly of the glass catfish ( Kryptopterus vitreolus) reveals molecular clues to its transparent phenotype Journal article
Bian, Chao, Li, Rui Han, Ruan, Zhi Qiang, Chen, Wei Ting, Huang, Yu, Liu, Li Yue, Zhou, Hong Ling, Chong, Cheong Meng, Mu, Xi Dong, Shi, Qiong. Chromosome-level genome assembly of the glass catfish ( Kryptopterus vitreolus) reveals molecular clues to its transparent phenotype[J]. Zoological research, 2024, 45(5), 1027-1036.
Authors:  Bian, Chao;  Li, Rui Han;  Ruan, Zhi Qiang;  Chen, Wei Ting;  Huang, Yu; et al.
Favorite | TC[WOS]:1 TC[Scopus]:0  IF:4.0/4.5 | Submit date：2024/09/03
Glass Catfish  Whole-genome Sequencing  Edn3b−/− Mutant  Transparent Phenotype  
Leveraging cfDNA fragmentomic features in a stacked ensemble model for early detection of esophageal squamous cell carcinoma Journal article
Jiao, Zichen, Zhang, Xiaoqiang, Xuan, Yulong, Shi, Xiaoming, Zhang, Zirui, Yu, Ao, Li, Ningyou, Yang, Shanshan, He, Xiaofeng, Zhao, Gefei, Yang, Ruowei, Chen, Jianqun, Wu, Xuxiaochen, Bao, Hua, Wang, Fufeng, Ren, Wei, Liang, Hongwei, Chen, Qihan, Wang, Tao. Leveraging cfDNA fragmentomic features in a stacked ensemble model for early detection of esophageal squamous cell carcinoma[J]. Cell Reports Medicine, 2024, 5(8), 101664.
Authors:  Jiao, Zichen;  Zhang, Xiaoqiang;  Xuan, Yulong;  Shi, Xiaoming;  Zhang, Zirui; et al.
Favorite | TC[WOS]:2 TC[Scopus]:2  IF:11.7/0 | Submit date：2024/12/26
Esophageal Cancer  Early Detection  Cell-free Dna  Whole-genome Sequencing  Machine Learning  
Exploring the cobia (Rachycentron canadum) genome: Unveiling putative male heterogametic regions and identification of sex-specific markers Journal article
Xueyan Shen, Jie Hu, José M. Yáñez, Giana Bastos Gomes, Zhi Weng Josiah Poon, Derick Foster, Jorge F. Alarcon, Libin Shao, Xinyu Guo, Yunchang Shao, Roger Huerlimann, Chengze Li, Evan Goulden, Kelli Anderson, Guangyi Fan, Jose A. Domingos. Exploring the cobia (Rachycentron canadum) genome: Unveiling putative male heterogametic regions and identification of sex-specific markers[J]. GigaScience, 2024, 13, giae034.
Authors:  Xueyan Shen;  Jie Hu;  José M. Yáñez;  Giana Bastos Gomes;  Zhi Weng Josiah Poon; et al.
Favorite | TC[WOS]:0 TC[Scopus]:0  IF:11.8/9.4 | Submit date：2024/10/14
Chromosome-level Genome  Cobia  Molecular Sex Markers  Stlfr  Hi-c  Pacbio Sequencing  
A Food Poisoning Caused by Salmonella Enterica (S. Enteritidis) ST11 Carrying Multi-Antimicrobial Resistance Genes in 2019, China Journal article
Zhang, Zhiyi, Li, Baisheng, Huang, Huitao, Fang, Yanmei, Yang, Wenqiang. A Food Poisoning Caused by Salmonella Enterica (S. Enteritidis) ST11 Carrying Multi-Antimicrobial Resistance Genes in 2019, China[J]. Infection and Drug Resistance, 2024, 17, 1751-1762.
Authors:  Zhang, Zhiyi;  Li, Baisheng;  Huang, Huitao;  Fang, Yanmei;  Yang, Wenqiang
Favorite | TC[WOS]:1 TC[Scopus]:1  IF:2.9/3.6 | Submit date：2024/06/05
Antimicrobial Resistance  Multi-locus Sequence Typing  Salmonella Food Poisoning  Sequence Type 11  Whole-genome Sequencing  
Single cell analyses of cancer cells identified two regulatorily and functionally distinct categories in differentially expressed genes among tumor subclones Journal article
Cao, Wei, Wang, Xuefei, Luo, Kaiwen, Li, Yang, Sun, Jiahong, Fu, Ruqing, Zhang, Qi, Hong, Ni, Cheung, Edwin, Jin, Wenfei. Single cell analyses of cancer cells identified two regulatorily and functionally distinct categories in differentially expressed genes among tumor subclones[J]. Heliyon, 2024, 10(6), e28071.
Authors:  Cao, Wei;  Wang, Xuefei;  Luo, Kaiwen;  Li, Yang;  Sun, Jiahong; et al.
Favorite | TC[WOS]:0 TC[Scopus]:0  IF:3.4/3.9 | Submit date：2024/04/02
Colorectal Cancer  Single Cell Rna Sequencing  Single Cell Whole Genome Sequencing  Copy Number Variations  Differentially Expressed Gene  Cell-cell Communication  
Chromosome-level genome assembly of Welwitschia mirabilis, a unique Namib Desert species Journal article
Han, Yuwei, Zhang, Weixiong, Zhou, Botong, Zeng, Peng, Tian, Zunzhe, Cai, Jing. Chromosome-level genome assembly of Welwitschia mirabilis, a unique Namib Desert species[J]. Molecular Ecology Resources, 2022, 22(1), 391-403.
Authors:  Han, Yuwei;  Zhang, Weixiong;  Zhou, Botong;  Zeng, Peng;  Tian, Zunzhe; et al.
Favorite | TC[WOS]:3 TC[Scopus]:3  IF:5.5/7.8 | Submit date：2022/02/21
Chromosome-level Genome Assembly  Gene Family  Genome Evolution  Positively Selected Genes  Welwitschia Mirabilis  Whole-genome Sequencing  
Secondary metabolite production potential of mangrove-derived streptomyces olivaceus Journal article
Hu, Dini, Lee, Simon Ming Yuen, Li, Kai, Mok, Kai Meng. Secondary metabolite production potential of mangrove-derived streptomyces olivaceus[J]. Marine Drugs, 2021, 19(6), 332.
Authors:  Hu, Dini;  Lee, Simon Ming Yuen;  Li, Kai;  Mok, Kai Meng
Favorite | TC[WOS]:2 TC[Scopus]:4  IF:4.9/5.2 | Submit date：2021/12/08
Actinobacteria  Mangroves  Mass Spectrometry  Streptomyces  Validamycin  Whole Genome Sequencing  
Exploring the Potential of Antibiotic Production From Rare Actinobacteria by Whole-Genome Sequencing and Guided MS/MS Analysis Journal article
Hu,Dini, Sun,Chenghang, Jin,Tao, Fan,Guangyi, Mok,Kai Meng, Li,Kai, Lee,Simon Ming Yuen. Exploring the Potential of Antibiotic Production From Rare Actinobacteria by Whole-Genome Sequencing and Guided MS/MS Analysis[J]. Frontiers in Microbiology, 2020, 11, 1540.
Authors:  Hu,Dini;  Sun,Chenghang;  Jin,Tao;  Fan,Guangyi;  Mok,Kai Meng; et al.
Favorite | TC[WOS]:13 TC[Scopus]:15  IF:4.0/5.1 | Submit date：2021/03/01
Antibiotics  Mangroves  Mass Spectrometry  Rare Actinobacteria  Whole-genome Sequencing  
Genome and transcriptome sequencing of casper and roy zebrafish mutants provides novel genetic clues for iridophore loss Journal article
Bian,Chao, Chen,Weiting, Ruan,Zhiqiang, Hu,Zhe, Huang,Yu, Lv,Yunyun, Xu,Tengfei, Li,Jia, Shi,Qiong, Ge,Wei. Genome and transcriptome sequencing of casper and roy zebrafish mutants provides novel genetic clues for iridophore loss[J]. International Journal of Molecular Sciences, 2020, 21(7), 2385.
Authors:  Bian,Chao;  Chen,Weiting;  Ruan,Zhiqiang;  Hu,Zhe;  Huang,Yu; et al.
Favorite | TC[WOS]:8 TC[Scopus]:8 | Submit date：2021/03/02
Casper  Genome Sequencing  Iridophore Degeneration  Roy  Transcriptome Sequencing  Variation  
Genome and population sequencing of a chromosome-level genome assembly of the Chinese tapertail anchovy (Coilia nasus) provides novel insights into migratory adaptation Journal article
Xu,Gangchun, Bian,Chao, Nie,Zhijuan, Li,Jia, Wang,Yuyu, Xu,Dongpo, You,Xinxin, Liu,Hongbo, Gao,Jiancao, Li,Hongxia, Liu,Kai, Yang,Jian, Li,Quanjie, Shao,Nailin, Zhuang,Yanbing, Fang,Dian, Jiang,Tao, Lv,Yunyun, Huang,Yu, Gu,Ruobo, Xu,Junmin, Ge,Wei, Shi,Qiong, Xu,Pao. Genome and population sequencing of a chromosome-level genome assembly of the Chinese tapertail anchovy (Coilia nasus) provides novel insights into migratory adaptation[J]. GigaScience, 2020, 9(1), giz157.
Authors:  Xu,Gangchun;  Bian,Chao;  Nie,Zhijuan;  Li,Jia;  Wang,Yuyu; et al.
Favorite | TC[WOS]:23 TC[Scopus]:29  IF:11.8/9.4 | Submit date：2021/03/02
Chinese Tapertail Anchovy (Coilia Nasus)  Genome And Population Sequencing  Genome Assembly  Migratory Dimorphism And Adaptation