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Pathogenic variants in human DNA damage repair genes mostly arose in recent human history Journal article
Zhao, Bojin, Li, Jiaheng, Sinha, Siddharth, Qin, Zixin, Kou, Si Hoi, Xiao, Fengxia, Lei, Huijun, Chen, Tianhui, Cao, Wenming, Ding, Xiaofan, Wang, San Ming. Pathogenic variants in human DNA damage repair genes mostly arose in recent human history[J]. BMC Cancer, 2024, 24(1), 415.
Authors:  Zhao, Bojin;  Li, Jiaheng;  Sinha, Siddharth;  Qin, Zixin;  Kou, Si Hoi; et al.
Favorite | TC[WOS]:3 TC[Scopus]:3  IF:3.4/3.8 | Submit date：2024/05/16
Archaeological  Dna Damage Repair  Evolutionary Origin  Pathogenic Variants  Phylogenetic  
Pathogenic variants in human DNA damage repair genes mostly arose after the latest human out-of-Africa migration Journal article
He, Jun, Kou, Si Hoi, Li, Jiaheng, Ding, Xiaofan, Wang, San Ming. Pathogenic variants in human DNA damage repair genes mostly arose after the latest human out-of-Africa migration[J]. Frontiers in Genetics, 2024, 15, 1408952.
Authors:  He, Jun;  Kou, Si Hoi;  Li, Jiaheng;  Ding, Xiaofan;  Wang, San Ming
Favorite | TC[WOS]:0 TC[Scopus]:0  IF:2.8/3.3 | Submit date：2024/08/05
Brca  Ddr Genes  Evolution Origin  Pathogenic Variants  Tp53  
Using Portuguese BRCA pathogenic variation as a model to study the impact of human admixture on human health Journal article
Andaluz, Stephanie, Zhao, Bojin, Sinha, Siddharth, Lagniton, Philip Naderev Panuringan, Costa, Diogo Alpuim, Ding, Xiaofan, Brito, Miguel, Wang, San Ming. Using Portuguese BRCA pathogenic variation as a model to study the impact of human admixture on human health[J]. BMC Genomics, 2024, 25(1), 416.
Authors:  Andaluz, Stephanie;  Zhao, Bojin;  Sinha, Siddharth;  Lagniton, Philip Naderev Panuringan;  Costa, Diogo Alpuim; et al.
Favorite | TC[WOS]:0 TC[Scopus]:0  IF:3.5/4.1 | Submit date：2024/05/16
Admixture  Brca1  Brca2  Pathogenic Variants  Cancer Risk  Portuguese  Brazilian  
Evolutionary origin of germline pathogenic variants in human DNA mismatch repair genes Journal article
Lei, Huijun, Li, Jiaheng, Zhao, Bojin, Kou, Si Hoi, Xiao, Fengxia, Chen, Tianhui, Wang, San Ming. Evolutionary origin of germline pathogenic variants in human DNA mismatch repair genes[J]. Human Genomics, 2024, 18(1), 5.
Authors:  Lei, Huijun;  Li, Jiaheng;  Zhao, Bojin;  Kou, Si Hoi;  Xiao, Fengxia; et al.
Favorite | TC[WOS]:0 TC[Scopus]:0  IF:3.8/4.0 | Submit date：2024/05/16
Ancient Genome  Conservation  Dna Mismatch Repair  Evolutionary Origin  Pathogenic Variant  
Classification of MLH1 Missense VUS Using Protein Structure-Based Deep Learning-Ramachandran Plot-Molecular Dynamics Simulations Method Journal article
Tam, Benjamin, Qin, Zixin, Zhao, Bojin, Sinha, Siddharth, Lei, Chon Lok, Wang, San Ming. Classification of MLH1 Missense VUS Using Protein Structure-Based Deep Learning-Ramachandran Plot-Molecular Dynamics Simulations Method[J]. International Journal of Molecular Sciences, 2024, 25(2), 850.
Authors:  Tam, Benjamin;  Qin, Zixin;  Zhao, Bojin;  Sinha, Siddharth;  Lei, Chon Lok; et al.
Favorite | TC[WOS]:3 TC[Scopus]:3  IF:4.9/5.6 | Submit date：2024/02/22
Autoencoder  Deep Learning  Mlh1  Molecular Dynamics Simulation  Neural Network  Ramachandran Plot  Vus  
Pancreatic cancer cluster region identified in BRCA2 Journal article
Chian,Jia Sheng, Xu,Wenzheng, Wang,San Ming. Pancreatic cancer cluster region identified in BRCA2[J]. Journal of Medical Genetics, 2023, 60(11), 1052-1056.
Authors:  Chian,Jia Sheng;  Xu,Wenzheng;  Wang,San Ming
Favorite | TC[WOS]:2 TC[Scopus]:2  IF:3.5/4.1 | Submit date：2023/08/03
Pancreatic Diseases  
Classification of PTEN missense VUS through exascale simulations Journal article
Sinha, Siddharth, Li, Jiaheng, Tam, Benjamin, Wang, San Ming. Classification of PTEN missense VUS through exascale simulations[J]. Briefings in Bioinformatics, 2023, 24(6), bbad361.
Authors:  Sinha, Siddharth;  Li, Jiaheng;  Tam, Benjamin;  Wang, San Ming
Favorite | TC[WOS]:1 TC[Scopus]:1  IF:6.8/7.9 | Submit date：2023/12/04
Evolution Selection  Lipid Phosphatase Activity  Md Simulations  Pten  Replica Exchange Molecular Dynamics (Remd) Simulations  Variants Of Uncertain Significance (Vus)  
Evolutionary Origin of Human PALB2 Germline Pathogenic Variants Journal article
Chian, Jia Sheng, Li, Jiaheng, Wang, San Ming. Evolutionary Origin of Human PALB2 Germline Pathogenic Variants[J]. International Journal of Molecular Sciences, 2023, 24(14).
Authors:  Chian, Jia Sheng;  Li, Jiaheng;  Wang, San Ming
Favorite | TC[WOS]:3 TC[Scopus]:3  IF:4.9/5.6 | Submit date：2023/09/25
Evolutionary Origin  Palb2  Paleoanthropology  Phylogenetic  
DARVIC: Dihedral angle-reliant variant impact classifier for functional prediction of missense VUS Journal article
Lagniton,Philip Naderev P., Tam,Benjamin, Wang,San Ming. DARVIC: Dihedral angle-reliant variant impact classifier for functional prediction of missense VUS[J]. Computer Methods and Programs in Biomedicine, 2023, 238, 107596.
Authors:  Lagniton,Philip Naderev P.;  Tam,Benjamin;  Wang,San Ming
Favorite | TC[WOS]:0 TC[Scopus]:0  IF:4.9/5.5 | Submit date：2023/08/03
Dihedral Angles  Human Muty Homolog (Mutyh)  Missense Variants  Molecular Dynamics Simulations (Md Simulations)  Protein Structure  Ramachandran Principle  Tumor Protein 53 (Tp53)  
Integration of deep learning with Ramachandran plot molecular dynamics simulation for genetic variant classification Journal article
Tam, Benjamin, Qin, Zixin, Zhao, Bojin, Wang, San Ming, Lei, Chon Lok. Integration of deep learning with Ramachandran plot molecular dynamics simulation for genetic variant classification[J]. ISCIENCE, 2023, 26(3), 106122.
Authors:  Tam, Benjamin;  Qin, Zixin;  Zhao, Bojin;  Wang, San Ming;  Lei, Chon Lok
Favorite | TC[WOS]:5 TC[Scopus]:5  IF:4.6/5.0 | Submit date：2023/04/03