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Identification of Anticancer Peptides from the Genome of Candida albicans: in Silico Screening, in Vitro and in Vivo Validations Journal article
Cheong, Hong Hin, Zuo, Weimin, Chen, Jiarui, Un, Chon Wai, Si, Yain Whar, Wong, Koon Ho, Kwok, Hang Fai, Siu, Shirley W.I.. Identification of Anticancer Peptides from the Genome of Candida albicans: in Silico Screening, in Vitro and in Vivo Validations[J]. Journal of Chemical Information and Modeling, 2024, 64(15), 6174-6189.
Authors:  Cheong, Hong Hin;  Zuo, Weimin;  Chen, Jiarui;  Un, Chon Wai;  Si, Yain Whar; et al.
Favorite | TC[WOS]:0 TC[Scopus]:0  IF:5.6/5.9 | Submit date：2024/08/05
A deep learning method for predicting the minimum inhibitory concentration of antimicrobial peptides against Escherichia coli using Multi-Branch-CNN and Attention Review article
2023
Authors:  Yan, Jielu;  Zhang, Bob;  Zhou, Mingliang;  Campbell-Valois, François Xavier;  Siu, Shirley W.I.
Favorite | TC[WOS]:3 TC[Scopus]:5  IF:5.0/6.1 | Submit date：2024/01/02
Antimicrobial Peptides  Deep Learning  Drug Discovery  Minimum Inhibitory Concentrations  Regression  
Discovery and analysis of a novel antimicrobial peptide B1AW from the skin secretion of Amolops wuyiensis and improving the membrane-binding affinity through the construction of the lysine-introduced analogue Journal article
Qin,Haixin, Zuo,Weimin, Ge,Lilin, Siu,Shirley W.I., Wang,Lei, Chen,Xiaoling, Ma,Chengbang, Chen,Tianbao, Zhou,Mei, Cao,Zhijian, Kwok,Hang Fai. Discovery and analysis of a novel antimicrobial peptide B1AW from the skin secretion of Amolops wuyiensis and improving the membrane-binding affinity through the construction of the lysine-introduced analogue[J]. Computational and Structural Biotechnology Journal, 2023, 21, 2960-2972.
Authors:  Qin,Haixin;  Zuo,Weimin;  Ge,Lilin;  Siu,Shirley W.I.;  Wang,Lei; et al.
Favorite | TC[WOS]:5 TC[Scopus]:5  IF:4.4/5.0 | Submit date：2023/08/03
Anticancer Peptide  Antimicrobial Peptide  Brevinin Peptide  Molecular Dynamic Simulation  Peptide Modification  
Recent Progress in the Discovery and Design of Antimicrobial Peptides Using Traditional Machine Learning and Deep Learning Journal article
Yan, Jielu, Cai, Jianxiu, Zhang, Bob, Wang, Yapeng, Wong, Derek F., Siu, Shirley W.I.. Recent Progress in the Discovery and Design of Antimicrobial Peptides Using Traditional Machine Learning and Deep Learning[J]. Antibiotics-Basel, 2022, 11(10), 1451.
Authors:  Yan, Jielu;  Cai, Jianxiu;  Zhang, Bob;  Wang, Yapeng;  Wong, Derek F.; et al.
Favorite | TC[WOS]:37 TC[Scopus]:41  IF:4.3/4.6 | Submit date：2022/11/07
Antimicrobial Peptide  Machine Learning  Deep Learning  Classification  Regression  Therapeutic Peptide  Medicine  
Multi-Branch-CNN: Classification of ion channel interacting peptides using multi-branch convolutional neural network Journal article
Yan, Jielu, Zhang, Bob, Zhou, Mingliang, Kwok, Hang Fai, Siu, Shirley W.I.. Multi-Branch-CNN: Classification of ion channel interacting peptides using multi-branch convolutional neural network[J]. Computers in Biology and Medicine, 2022, 147, 105717.
Authors:  Yan, Jielu;  Zhang, Bob;  Zhou, Mingliang;  Kwok, Hang Fai;  Siu, Shirley W.I.
Favorite | TC[WOS]:13 TC[Scopus]:14  IF:7.0/6.7 | Submit date：2022/08/01
Classification  Deep Learning  Drug Discovery  Ion Channel  Multi-branch-cnn  Peptides  
Chemical toxicity prediction based on semi-supervised learning and graph convolutional neural network Journal article
Chen, Jiarui, Si, Yain Whar, Un, Chon Wai, Siu, Shirley W.I.. Chemical toxicity prediction based on semi-supervised learning and graph convolutional neural network[J]. Journal of Cheminformatics, 2021, 13(1).
Authors:  Chen, Jiarui;  Si, Yain Whar;  Un, Chon Wai;  Siu, Shirley W.I.
Favorite | TC[WOS]:30 TC[Scopus]:37  IF:7.1/9.3 | Submit date：2021/12/08
Admet  Chemical Toxicity  Deep Learning  Graph Convolutional Neural Network  Mean Teacher  Semi-supervised Learning  Tox21  
XDeep-AcPEP: Deep Learning Method for Anticancer Peptide Activity Prediction Based on Convolutional Neural Network and Multitask Learning Review article
2021
Authors:  Chen, Jiarui;  Cheong, Hong Hin;  Siu, Shirley W.I.
Favorite | TC[WOS]:48 TC[Scopus]:56  IF:5.6/5.9 | Submit date：2021/12/08
LigTMap: ligand and structure-based target identification and activity prediction for small molecular compounds Journal article
Shaikh, Faraz, Tai, Hio Kuan, Desai, Nirali, Siu, Shirley W.I.. LigTMap: ligand and structure-based target identification and activity prediction for small molecular compounds[J]. Journal of Cheminformatics, 2021, 13(1), 44.
Authors:  Shaikh, Faraz;  Tai, Hio Kuan;  Desai, Nirali;  Siu, Shirley W.I.
Favorite | TC[WOS]:15 TC[Scopus]:16  IF:7.1/9.3 | Submit date：2021/12/09
Binding Affinity Prediction  Binding Interaction Fingerprint  Drug Repurposing  Fingerprint Similarity  Inverse Docking  Psovina  Random Forest  Target Prediction  
Aggregation and its influence on the bioactivities of a novel antimicrobial peptide, temporin-pf, and its analogues Journal article
Yu Zai, Xinping Xi, Zhuming Ye, Chengbang Ma, Mei Zhou, Xiaoling Chen, Shirley W.I. Siu, Tianbao Chen, Lei Wang, Hang Fai Kwok. Aggregation and its influence on the bioactivities of a novel antimicrobial peptide, temporin-pf, and its analogues[J]. International Journal of Molecular Sciences, 2021, 22(9), 4509.
Authors:  Yu Zai;  Xinping Xi;  Zhuming Ye;  Chengbang Ma;  Mei Zhou; et al.
Favorite | TC[WOS]:25 TC[Scopus]:26 | Submit date：2021/12/07
Antimicrobial Activity  Md Simulation  Peptide Aggregation  Temporin  
Effect of Concentration, Chain Length, Hydrophobicity, and an External Electric Field on the Growth of Mixed Alkanethiol Self-Assembled Monolayers: A Molecular Dynamics Study Journal article
Bhadra, Pratiti, Siu, Shirley W.I.. Effect of Concentration, Chain Length, Hydrophobicity, and an External Electric Field on the Growth of Mixed Alkanethiol Self-Assembled Monolayers: A Molecular Dynamics Study[J]. Langmuir, 2021, 37(5), 1913-1924.
Authors:  Bhadra, Pratiti;  Siu, Shirley W.I.
Favorite | TC[WOS]:17 TC[Scopus]:18  IF:3.7/3.5 | Submit date：2021/12/07