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cSSMD: Assessing collective activity for addressing off-target effects in genome-scale RNA interference screens
Journal article
Zhang X.D., Santini F., Lacson R., Marine S.D., Wu Q., Benetti L., Yang R., McCampbell A., Berger J.P., Toolan D.M., Stec E.M., Holder D.J., Soper K.A., Heyse J.F., Ferrer M.. cSSMD: Assessing collective activity for addressing off-target effects in genome-scale RNA interference screens[J]. Bioinformatics, 2011, 27(20), 2775-2781.
Authors:
Zhang X.D.
;
Santini F.
;
Lacson R.
;
Marine S.D.
;
Wu Q.
; et al.
Favorite
|
TC[WOS]:
14
TC[Scopus]:
15
|
Submit date:2019/01/03
The use of SSMD-based false discovery and false nondiscovery rates in genome-scale RNAi screens
Journal article
Zhang X.D., Lacson R., Yang R., Marine S.D., McCampbell A., Toolan D.M., Hare T.R., Kajdas J., Berger J.P., Holder D.J., Heyse J.F., Ferrer M.. The use of SSMD-based false discovery and false nondiscovery rates in genome-scale RNAi screens[J]. Journal of Biomolecular Screening, 2010, 15(9), 1123-1131.
Authors:
Zhang X.D.
;
Lacson R.
;
Yang R.
;
Marine S.D.
;
McCampbell A.
; et al.
Favorite
|
TC[WOS]:
18
TC[Scopus]:
22
|
Submit date:2019/01/03
-value
False Discovery Rate
False Nondiscovery Rate
High-throughput Screening
p
q
Rnai
Error rates and powers in genome-scale RNAi screens
Journal article
Zhang X.D., Marine S.D., Ferrer M.. Error rates and powers in genome-scale RNAi screens[J]. Journal of Biomolecular Screening, 2009, 14(3), 230-238.
Authors:
Zhang X.D.
;
Marine S.D.
;
Ferrer M.
Favorite
|
TC[WOS]:
10
TC[Scopus]:
10
|
Submit date:2019/01/03
False-negative Rate
Power
Restricted False-positive Rate
Strictly Standardized Mean Difference
Type i Error
Type Ii Error
Hit selection with false discovery rate control in genome-scale RNAi screens
Journal article
Zhang X.D., Kuan P.F., Ferrer M., Shu X., Liu Y.C., Gates A.T., Kunapuli P., Stec E.M., Xu M., Marine S.D., Holder D.J., Strulovici B., Heyse J.F., Espeseth A.S.. Hit selection with false discovery rate control in genome-scale RNAi screens[J]. Nucleic Acids Research, 2008, 36(14), 4667-4679.
Authors:
Zhang X.D.
;
Kuan P.F.
;
Ferrer M.
;
Shu X.
;
Liu Y.C.
; et al.
Favorite
|
TC[WOS]:
26
TC[Scopus]:
28
|
Submit date:2019/01/03
Integrating experimental and analytic approaches to improve data quality in genome-wide RNAi screens
Journal article
Zhang X.D., Espeseth A.S., Johnson E.N., Chin J., Gates A., Mitnaul L.J., Marine S.D., Tian J., Stec E.M., Kunapuli P., Holder D.J., Heyse J.F., Strulovici B., Ferrer M.. Integrating experimental and analytic approaches to improve data quality in genome-wide RNAi screens[J]. Journal of Biomolecular Screening, 2008, 13(5), 378-389.
Authors:
Zhang X.D.
;
Espeseth A.S.
;
Johnson E.N.
;
Chin J.
;
Gates A.
; et al.
Favorite
|
TC[WOS]:
29
TC[Scopus]:
33
|
Submit date:2019/01/03
Plate Design
Quality Control
Rnai High-throughput Screening
Strictly Standardized Mean Difference
z Factor
The use of strictly standardized mean difference for hit selection in primary RNA interference high-throughput screening experiments
Journal article
Zhang X.D., Ferrer M., Espeseth A.S., Marine S.D., Stec E.M., Crackower M.A., Holder D.J., Heyse J.F., Strulovici B.. The use of strictly standardized mean difference for hit selection in primary RNA interference high-throughput screening experiments[J]. Journal of Biomolecular Screening, 2007, 12(4), 497-509.
Authors:
Zhang X.D.
;
Ferrer M.
;
Espeseth A.S.
;
Marine S.D.
;
Stec E.M.
; et al.
Favorite
|
TC[WOS]:
76
TC[Scopus]:
77
|
Submit date:2019/01/03
d+-probability
High-throughput Screening
Hit Rate Point
Restricted False-positive Rate
Strictly Standardized Mean Difference