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Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes Journal article
Moran I., Akerman I., Van De Bunt M., Xie R., Benazra M., Nammo T., Arnes L., Nakic N., Garcia-Hurtado J., Rodriguez-Segui S., Pasquali L., Sauty-Colace C., Beucher A., Scharfmann R., Van Arensbergen J., Johnson P.R., Berry A., Lee C., Harkins T., Gmyr V., Pattou F., Kerr-Conte J., Piemonti L., Berney T., Hanley N., Gloyn A.L., Sussel L., Langman L., Brayman K.L., Sander M., McCarthy M.I., Ravassard P., Ferrer J.. Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes[J]. Cell Metabolism, 2012, 16(4), 435-448.
Authors:  Moran I.;  Akerman I.;  Van De Bunt M.;  Xie R.;  Benazra M.; et al.
Favorite | TC[WOS]:367 TC[Scopus]:393  IF:27.7/31.2 | Submit date：2019/01/16
A genome-wide siRNA screen to identify modulators of insulin sensitivity and gluconeogenesis Journal article
Yang R., Lacson R.G., Castriota G., Zhang X.D., Liu Y., Zhao W., Einstein M., Camargo L.M., Qureshi S., Wong K.K., Zhang B.B., Ferrer M., Berger J.P.. A genome-wide siRNA screen to identify modulators of insulin sensitivity and gluconeogenesis[J]. PLoS ONE, 2012, 7(5).
Authors:  Yang R.;  Lacson R.G.;  Castriota G.;  Zhang X.D.;  Liu Y.; et al.
Favorite | TC[WOS]:3 TC[Scopus]:3 | Submit date：2019/01/03
cSSMD: Assessing collective activity for addressing off-target effects in genome-scale RNA interference screens Journal article
Zhang X.D., Santini F., Lacson R., Marine S.D., Wu Q., Benetti L., Yang R., McCampbell A., Berger J.P., Toolan D.M., Stec E.M., Holder D.J., Soper K.A., Heyse J.F., Ferrer M.. cSSMD: Assessing collective activity for addressing off-target effects in genome-scale RNA interference screens[J]. Bioinformatics, 2011, 27(20), 2775-2781.
Authors:  Zhang X.D.;  Santini F.;  Lacson R.;  Marine S.D.;  Wu Q.; et al.
Favorite | TC[WOS]:14 TC[Scopus]:15 | Submit date：2019/01/03
The use of SSMD-based false discovery and false nondiscovery rates in genome-scale RNAi screens Journal article
Zhang X.D., Lacson R., Yang R., Marine S.D., McCampbell A., Toolan D.M., Hare T.R., Kajdas J., Berger J.P., Holder D.J., Heyse J.F., Ferrer M.. The use of SSMD-based false discovery and false nondiscovery rates in genome-scale RNAi screens[J]. Journal of Biomolecular Screening, 2010, 15(9), 1123-1131.
Authors:  Zhang X.D.;  Lacson R.;  Yang R.;  Marine S.D.;  McCampbell A.; et al.
Favorite | TC[WOS]:18 TC[Scopus]:22 | Submit date：2019/01/03
-value  False Discovery Rate  False Nondiscovery Rate  High-throughput Screening  p  q  Rnai  
Inhibition of calcineurin-mediated endocytosis and α-amino-3-hydroxy- 5-methyl-4-isoxazolepropionic acid (AMPA) receptors prevents amyloid β oligomer-induced synaptic disruption Journal article
Zhao W.-Q., Santini F., Breese R., Ross D., Zhang X.D., Stone D.J., Ferrer M., Townsend M., Wolfe A.L., Seager M.A., Kinney G.G., Shughrue P.J., Ray W.J.. Inhibition of calcineurin-mediated endocytosis and α-amino-3-hydroxy- 5-methyl-4-isoxazolepropionic acid (AMPA) receptors prevents amyloid β oligomer-induced synaptic disruption[J]. Journal of Biological Chemistry, 2010, 285(10), 7619-7632.
Authors:  Zhao W.-Q.;  Santini F.;  Breese R.;  Ross D.;  Zhang X.D.; et al.
Favorite | TC[WOS]:159 TC[Scopus]:166 | Submit date：2019/01/03
Error rates and powers in genome-scale RNAi screens Journal article
Zhang X.D., Marine S.D., Ferrer M.. Error rates and powers in genome-scale RNAi screens[J]. Journal of Biomolecular Screening, 2009, 14(3), 230-238.
Authors:  Zhang X.D.;  Marine S.D.;  Ferrer M.
Favorite | TC[WOS]:10 TC[Scopus]:10 | Submit date：2019/01/03
False-negative Rate  Power  Restricted False-positive Rate  Strictly Standardized Mean Difference  Type i Error  Type Ii Error  
Genome-Scale RNAi Screen for Host Factors Required for HIV Replication Journal article
Zhou H., Xu M., Huang Q., Gates A.T., Zhang X.D., Castle J.C., Stec E., Ferrer M., Strulovici B., Hazuda D.J., Espeseth A.S.. Genome-Scale RNAi Screen for Host Factors Required for HIV Replication[J]. Cell Host and Microbe, 2008, 4(5), 495-504.
Authors:  Zhou H.;  Xu M.;  Huang Q.;  Gates A.T.;  Zhang X.D.; et al.
Favorite | TC[WOS]:614 TC[Scopus]:648 | Submit date：2019/01/03
Cellbio  Microbio  Sysbio  
Hit selection with false discovery rate control in genome-scale RNAi screens Journal article
Zhang X.D., Kuan P.F., Ferrer M., Shu X., Liu Y.C., Gates A.T., Kunapuli P., Stec E.M., Xu M., Marine S.D., Holder D.J., Strulovici B., Heyse J.F., Espeseth A.S.. Hit selection with false discovery rate control in genome-scale RNAi screens[J]. Nucleic Acids Research, 2008, 36(14), 4667-4679.
Authors:  Zhang X.D.;  Kuan P.F.;  Ferrer M.;  Shu X.;  Liu Y.C.; et al.
Favorite | TC[WOS]:26 TC[Scopus]:28 | Submit date：2019/01/03
Integrating experimental and analytic approaches to improve data quality in genome-wide RNAi screens Journal article
Zhang X.D., Espeseth A.S., Johnson E.N., Chin J., Gates A., Mitnaul L.J., Marine S.D., Tian J., Stec E.M., Kunapuli P., Holder D.J., Heyse J.F., Strulovici B., Ferrer M.. Integrating experimental and analytic approaches to improve data quality in genome-wide RNAi screens[J]. Journal of Biomolecular Screening, 2008, 13(5), 378-389.
Authors:  Zhang X.D.;  Espeseth A.S.;  Johnson E.N.;  Chin J.;  Gates A.; et al.
Favorite | TC[WOS]:29 TC[Scopus]:33 | Submit date：2019/01/03
Plate Design  Quality Control  Rnai High-throughput Screening  Strictly Standardized Mean Difference  z Factor  
Median absolute deviation to improve hit selection for genome-scale RNAi screens Journal article
Chung N., Zhang X.D., Kreamer A., Locco L., Kuan P.-F., Bartz S., Linsley P.S., Ferrer M., Strulovici B.. Median absolute deviation to improve hit selection for genome-scale RNAi screens[J]. Journal of Biomolecular Screening, 2008, 13(2), 149-158.
Authors:  Chung N.;  Zhang X.D.;  Kreamer A.;  Locco L.;  Kuan P.-F.; et al.
Favorite | TC[WOS]:143 TC[Scopus]:152 | Submit date：2019/01/03
Data Analysis  Functional Genomics  High-throughput Screen  Hit Selection  Mad  Median Absolute Deviation  Rna Interference  Rnai  Sirna