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AbdomenCT-1K: Is Abdominal Organ Segmentation a Solved Problem?
Ma, Jun1; Zhang, Yao2; Gu, Song3; Zhu, Cheng4; Ge, Cheng5; Zhang, Yichi6; An, Xingle7; Wang, Congcong8,9; Wang, Qiyuan10; Liu, Xin11; Cao, Shucheng12; Zhang, Qi13; Liu, Shangqing14; Wang, Yunpeng15; Li, Yuhui16; He, Jian17; Yang, Xiaoping18
2021-07-27
Source PublicationIEEE Transactions on Pattern Analysis and Machine Intelligence
ISSN0162-8828
Volume44Issue:10Pages:6695-6714
Abstract

With the unprecedented developments in deep learning, automatic segmentation of main abdominal organs seems to be a solved problem as state-of-the-art (SOTA) methods have achieved comparable results with inter-rater variability on many benchmark datasets. However, most of the existing abdominal datasets only contain single-center, single-phase, single-vendor, or single-disease cases, and it is unclear whether the excellent performance can generalize on diverse datasets. This paper presents a large and diverse abdominal CT organ segmentation dataset, termed AbdomenCT-1K, with more than 1000 (1K) CT scans from 12 medical centers, including multi-phase, multi-vendor, and multi-disease cases. Furthermore, we conduct a large-scale study for liver, kidney, spleen, and pancreas segmentation and reveal the unsolved segmentation problems of the SOTA methods, such as the limited generalization ability on distinct medical centers, phases, and unseen diseases. To advance the unsolved problems, we further build four organ segmentation benchmarks for fully supervised, semi-supervised, weakly supervised, and continual learning, which are currently challenging and active research topics. Accordingly, we develop a simple and effective method for each benchmark, which can be used as out-of-the-box methods and strong baselines. We believe the AbdomenCT-1K dataset will promote future in-depth research towards clinical applicable abdominal organ segmentation methods.

KeywordMulti-organ Segmentation Generalization Semi-supervised Learning Weakly Supervised Learning Continual Learning Benchmark Testing Liver Image Segmentation Biological Systems Pancreas Computed Tomography Kidney
DOI10.1109/TPAMI.2021.3100536
URLView the original
Indexed BySCIE
Language英語English
WOS Research AreaComputer Science ; Engineering
WOS SubjectComputer Science, Artificial Intelligence ; Engineering, Electrical & Electronic
WOS IDWOS:000853875300063
Scopus ID2-s2.0-85112593390
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Citation statistics
Document TypeJournal article
CollectionFaculty of Science and Technology
Corresponding AuthorYang, Xiaoping
Affiliation1.the Department of Mathematics, Nanjing University of Science and Technology, Nanjing, China
2.the Institute of Computing Technology, Chinese Academy of Sciences, Beijing, China
3.the School of Automation, Nanjing University of Information Science and Technology, Nanjing, China
4.Shenzhen Haichuang Medical CO., LTD., Shenzhen, China
5.the Institute of Bioinformatics and Medical Engineering, Jiangsu University of Technology, Changzhou, China
6.Biological Science and Medical Engineering, Beihang University, Beijing, China
7.Technology Department, China Electronics Cloud Brain (Tianjin) Technology CO., LTD, Tianjin, China
8.the School of Computer Science and Engineering, Tianjin University of Technology, Tianjin, China
9.the Department of Computer Science, Norwegian University of Science and Technology, Trondheim, Norway
10.the School of Electronic Science and Engineering, Nanjing University, Nanjing, China
11.the Suzhou LungCare Medical Technology Co., Ltd, Suzhou, China
12.the Bioengineering, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
13.the Department of Computer and Information Science, Faculty of Science and Technology, University of Macau, Taipa, Macau, China
14.the School of Biomedical Engineering, Southern Medical University, Guangzhou, China
15.the Institutes of Biomedical Sciences, Fudan University, Shanghai, China
16.the Computational Biology, University of Southern California, USA
17.the Department of Nuclear Medicine, Nanjing Drum Tower Hospital, Nanjing, China
18.the Department of Mathematics, Nanjing University, Nanjing, China
Recommended Citation
GB/T 7714
Ma, Jun,Zhang, Yao,Gu, Song,et al. AbdomenCT-1K: Is Abdominal Organ Segmentation a Solved Problem?[J]. IEEE Transactions on Pattern Analysis and Machine Intelligence, 2021, 44(10), 6695-6714.
APA Ma, Jun., Zhang, Yao., Gu, Song., Zhu, Cheng., Ge, Cheng., Zhang, Yichi., An, Xingle., Wang, Congcong., Wang, Qiyuan., Liu, Xin., Cao, Shucheng., Zhang, Qi., Liu, Shangqing., Wang, Yunpeng., Li, Yuhui., He, Jian., & Yang, Xiaoping (2021). AbdomenCT-1K: Is Abdominal Organ Segmentation a Solved Problem?. IEEE Transactions on Pattern Analysis and Machine Intelligence, 44(10), 6695-6714.
MLA Ma, Jun,et al."AbdomenCT-1K: Is Abdominal Organ Segmentation a Solved Problem?".IEEE Transactions on Pattern Analysis and Machine Intelligence 44.10(2021):6695-6714.
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