Residential College | false |
Status | 已發表Published |
Link prediction based on extended local path gain in protein-protein interaction network | |
Sun, Huiyan1; Liang, Yanchun1,2; Wang, Yan1; Chen, Liang3; Du, Wei1; Jiang, Yuexu4; Shi, Xiaohu1 | |
2019-02-01 | |
Source Publication | Tehnicki Vjesnik |
ISSN | 1330-3651 |
Volume | 26Issue:1Pages:177-182 |
Abstract | Protein-protein interaction (PPI) plays key role in each cellular process of any living cell, however, almost all organisms’ PPIs are still incomplete. In this study, we firstly proposed a computational method Extended Local Path (ELP), which estimated links’ existence likelihood by integrating all their neighbours’ local paths in the network. In addition, on this basis, we extended it to Extended Local Path Gain (ELPG), which estimated gain effect when adding or deleting one potential link to the network. Applying both ELPG and ELP methods and other four recognized outstanding methods on four public PPI data of Yeast, E. coli, Fruit fly and Mouse, we demonstrated that ELPG and ELP obtained better performance under two standard measures: area under curve (AUC) and Precision. Besides, ELP and ELPG were identified as the best features for classifying existing and unknown links by using support vector machine-recursive feature elimination (SVM-RFE) for feature selection. |
Keyword | Extended Local Path (Elp) Extended Local Path Gain (Elpg) Link Prediction Protein-protein Interaction (Ppi) |
DOI | 10.17559/TV-20180829122435 |
URL | View the original |
Indexed By | SCIE |
Language | 英語English |
WOS Research Area | Engineering |
WOS Subject | Engineering, Multidisciplinary |
WOS ID | WOS:000458827900026 |
Scopus ID | 2-s2.0-85063433356 |
Fulltext Access | |
Citation statistics | |
Document Type | Journal article |
Collection | University of Macau |
Corresponding Author | Wang, Yan; Shi, Xiaohu |
Affiliation | 1.Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, College of Computer Science and Technology, Jilin University, Changchun, #2699 Qianjin St, 130012, China 2.Zhuhai Laboratory of Key Laboratory of Symbol Computation, Knowledge Engineering of Ministry of Education, Department of Computer Science and Technology, Zhuhai College of Jilin University, Zhuhai, 519041, China 3.University of Macau, Taipa, Macau S.A.R., 999078, China 4.University of Missouri, Columbia, 65211, United States |
Recommended Citation GB/T 7714 | Sun, Huiyan,Liang, Yanchun,Wang, Yan,et al. Link prediction based on extended local path gain in protein-protein interaction network[J]. Tehnicki Vjesnik, 2019, 26(1), 177-182. |
APA | Sun, Huiyan., Liang, Yanchun., Wang, Yan., Chen, Liang., Du, Wei., Jiang, Yuexu., & Shi, Xiaohu (2019). Link prediction based on extended local path gain in protein-protein interaction network. Tehnicki Vjesnik, 26(1), 177-182. |
MLA | Sun, Huiyan,et al."Link prediction based on extended local path gain in protein-protein interaction network".Tehnicki Vjesnik 26.1(2019):177-182. |
Files in This Item: | There are no files associated with this item. |
Items in the repository are protected by copyright, with all rights reserved, unless otherwise indicated.
Edit Comment