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A chromosome-level genome of Antechinus flavipes provides a reference for an Australian marsupial genus with male death after mating
Tian, Ran1,2; Han, Kai3; Geng, Yuepan1; Yang, Chen1; Shi, Chengcheng3; Thomas, Patrick B.4,5,6; Pearce, Coral7; Moffatt, Kate7; Ma, Siming8; Xu, Shixia2; Yang, Guang2; Zhou, Xuming9; Gladyshev, Vadim N.10,16; Liu, Xin3; Fisher, Diana O.11; Chopin, Lisa K.4,5; Leiner, Natália O.12; Baker, Andrew M.7,13; Fan, Guangyi3,14,15; Seim, Inge1,4,5,7
2022-02-01
Source PublicationMolecular Ecology Resources
ISSN1755-098X
Volume22Issue:2Pages:740-754
Abstract

The 15 species of small carnivorous marsupials that comprise the genus Antechinus exhibit semelparity, a rare life-history strategy in mammals where synchronized death occurs after one breeding season. Antechinus males, but not females, age rapidly (demonstrate organismal senescence) during the breeding season and show promise as new animal models of ageing. Some antechinus species are also threatened or endangered. Here, we report a chromosome-level genome of a male yellow-footed antechinus Antechinus flavipes. The genome assembly has a total length of 3.2 Gb with a contig N50 of 51.8 Mb and a scaffold N50 of 636.7 Mb. We anchored and oriented 99.7% of the assembly on seven pseudochromosomes and found that repetitive DNA sequences occupy 51.8% of the genome. Draft genome assemblies of three related species in the subfamily Phascogalinae, two additional antechinus species (Antechinus argentus and A. arktos) and the iteroparous sister species Murexia melanurus, were also generated. Preliminary demographic analysis supports the hypothesis that climate change during the Pleistocene isolated species in Phascogalinae and shaped their population size. A transcriptomic profile across the A. flavipes breeding season allowed us to identify genes associated with aspects of the male die-off. The chromosome-level A. flavipes genome provides a steppingstone to understanding an enigmatic life-history strategy and a resource to assist the conservation of antechinuses.

KeywordAntechinus Chromosome-level Dasyurid Genome Assembly Semelparity Suicidal Reproduction
DOI10.1111/1755-0998.13501
URLView the original
Indexed BySCIE
Language英語English
WOS Research AreaBiochemistry & Molecular Biology ; Environmental Sciences & Ecology ; Evolutionary Biology
WOS SubjectBiochemistry & Molecular Biology ; Ecology ; Evolutionary Biology
WOS IDWOS:000697373000001
PublisherWILEY,111 RIVER ST, HOBOKEN 07030-5774, NJ
Scopus ID2-s2.0-85115190993
Fulltext Access
Citation statistics
Document TypeJournal article
CollectionTHE STATE KEY LABORATORY OF QUALITY RESEARCH IN CHINESE MEDICINE (UNIVERSITY OF MACAU)
Corresponding AuthorFan, Guangyi; Seim, Inge
Affiliation1.Integrative Biology Laboratory, College of Life Sciences, Nanjing Normal University, Nanjing, China
2.Jiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, Nanjing, China
3.BGI-Qingdao, BGI-Shenzhen, Qingdao, China
4.Ghrelin Research Group, Translational Research Institute-Institute of Health and Biomedical Innovation, School of Biomedical Sciences, Queensland University of Technology, Brisbane, Australia
5.Australian Prostate Cancer Research Centre-Queensland, Translational Research Institute – Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Australia
6.Queensland Bladder Cancer Initiative, Translational Research Institute-Institute of Health and Biomedical Innovation, School of Biomedical Sciences, Queensland University of Technology, Woolloongabba, Australia
7.School of Biology and Environmental Science, Queensland University of Technology, Brisbane, Australia
8.Genome Institute of Singapore, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore
9.Key Laboratory of Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
10.Division of Genetics, Department of Medicine, Brigham and Women’s Hospital and Harvard Medical School, Boston, United States
11.School of Biological Sciences, University of Queensland, Brisbane, Australia
12.Laboratório de Ecologia de Mamíferos, Instituto de Biologia, Universidade Federal de Uberlândia, Uberlândia, Brazil
13.Natural Environments Program, Queensland Museum, South Brisbane, Australia
14.State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macao
15.State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen, China
16.Harvard Med Sch, Boston, MA 02115 USA
Corresponding Author AffilicationInstitute of Chinese Medical Sciences
Recommended Citation
GB/T 7714
Tian, Ran,Han, Kai,Geng, Yuepan,et al. A chromosome-level genome of Antechinus flavipes provides a reference for an Australian marsupial genus with male death after mating[J]. Molecular Ecology Resources, 2022, 22(2), 740-754.
APA Tian, Ran., Han, Kai., Geng, Yuepan., Yang, Chen., Shi, Chengcheng., Thomas, Patrick B.., Pearce, Coral., Moffatt, Kate., Ma, Siming., Xu, Shixia., Yang, Guang., Zhou, Xuming., Gladyshev, Vadim N.., Liu, Xin., Fisher, Diana O.., Chopin, Lisa K.., Leiner, Natália O.., Baker, Andrew M.., Fan, Guangyi., & Seim, Inge (2022). A chromosome-level genome of Antechinus flavipes provides a reference for an Australian marsupial genus with male death after mating. Molecular Ecology Resources, 22(2), 740-754.
MLA Tian, Ran,et al."A chromosome-level genome of Antechinus flavipes provides a reference for an Australian marsupial genus with male death after mating".Molecular Ecology Resources 22.2(2022):740-754.
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