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Protein Cofactors Are Essential for High-Affinity DNA Binding by the Nuclear Factor kappa B ReIA Subunit
Mulero, Maria Carmen; Shahabi, Shandy; Ko, Myung Soo; Schiffer, Jamie M.; Huang, De-Bin; Wang, Vivien Ya-Fan; Amaro, Rommie E.; Huxford, Tom; Ghosh, Gourisankar
2018-05-22
Source PublicationBIOCHEMISTRY
ISSN0006-2960
Volume57Issue:20Pages:2943-2957
Abstract

Transcription activator proteins typically contain two functional domains: a DNA binding domain (DBD) that binds to DNA with sequence specificity and an activation domain (AD) whose established function is to recruit RNA polymerase. In this report, we show that purified recombinant nuclear factor kappa B (NF-kappa B) ReIA dimers bind specific kappa B DNA sites with an affinity significantly lower than that of the same dimers from nuclear extracts of activated cells, suggesting that additional nuclear cofactors might facilitate DNA binding by the ReIA dimers. Additionally, recombinant ReIA binds DNA with relatively low affinity at a physiological salt concentration in vitro. The addition of p53 or RPS3 (ribosomal protein S3) increases RelA:DNA binding affinity 2- to >50-fold depending on the protein and ionic conditions. These cofactor proteins do not form stable ternary complexes, suggesting that they stabilize the RelA:DNA complex through dynamic interactions. Surprisingly, the ReIA-DBD alone fails to bind DNA under the same solution conditions even in the presence of cofactors, suggesting an important role of the ReIA-AD in DNA binding. Reduced RelA:DNA binding at a physiological ionic strength suggests that multiple cofactors might be acting simultaneously to mitigate the electrolyte effect and stabilize the RelA:DNA complex in vivo. Overall, our observations suggest that the ReIA-AD and multiple cofactor proteins function cooperatively to prime the ReIA-DBD and stabilize the RelA:DNA complex in cells. Our study provides a mechanism for nuclear cofactor proteins in NF-kappa B-dependent gene regulation.

DOI10.1021/acs.biochem.8b00158
URLView the original
Indexed BySCIE
Language英語English
WOS Research AreaBiochemistry & Molecular Biology
WOS SubjectBiochemistry & Molecular Biology
WOS IDWOS:000433404600006
PublisherAMER CHEMICAL SOC
The Source to ArticleWOS
Scopus ID2-s2.0-85046549077
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Citation statistics
Document TypeJournal article
CollectionUniversity of Macau
Recommended Citation
GB/T 7714
Mulero, Maria Carmen,Shahabi, Shandy,Ko, Myung Soo,et al. Protein Cofactors Are Essential for High-Affinity DNA Binding by the Nuclear Factor kappa B ReIA Subunit[J]. BIOCHEMISTRY, 2018, 57(20), 2943-2957.
APA Mulero, Maria Carmen., Shahabi, Shandy., Ko, Myung Soo., Schiffer, Jamie M.., Huang, De-Bin., Wang, Vivien Ya-Fan., Amaro, Rommie E.., Huxford, Tom., & Ghosh, Gourisankar (2018). Protein Cofactors Are Essential for High-Affinity DNA Binding by the Nuclear Factor kappa B ReIA Subunit. BIOCHEMISTRY, 57(20), 2943-2957.
MLA Mulero, Maria Carmen,et al."Protein Cofactors Are Essential for High-Affinity DNA Binding by the Nuclear Factor kappa B ReIA Subunit".BIOCHEMISTRY 57.20(2018):2943-2957.
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