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Autophagy and Tumor Database: ATdb, a novel database connecting autophagy and tumor
Chen,Kelie1; Yang,Dexin1; Zhao,Fan1; Wang,Shengchao2; Ye,Yao3; Sun,Wenjie4; Lu,Haohua1; Ruan,Zhi5; Xu,Jinming6; Wang,Tianru7; Lu,Guang8; Wang,Liming8; Shi,Yu9; Zhang,Honghe4; Wu,Han10; Lu,Weiguo2; Shen,Han Ming8,11; Xia,Dajing1; Wu,Yihua1
2020-07
Source PublicationDatabase-The Journal of Biological Databases and Curation
ABS Journal Level2
ISSN1758-0463
Volume2020Pages:baaa052
Abstract

Autophagy is an essential cellular process that is closely implicated in diverse pathophysiological processes and a variety of human diseases, especially tumors. Autophagy is regarded as not only an anti-cancer process in tumorigenesis but also a pro-tumor process in progression and metastasis according to current research. It means the role of autophagy in tumor is considered to be complex, controversial and context dependent. Hence, a comprehensive database is of great significance to obtain an in-depth understanding of such complex correlations between autophagy and tumor. To achieve this objective, here we developed the Autophagy and Tumor Database (named as ATdb, http://www.bigzju.com/ATdb/#/) to compile the published information concerning autophagy and tumor research. ATdb connected 25 types of tumors with 137 genes required for autophagy-related pathways, containing 219 population filters, 2650 hazard ratio trend plots, 658 interacting microRNAs, 266 interacting long non-coding RNAs, 155 post-translational modifications, 298 DNA methylation records, 331 animal models and 70 clinical trials. ATdb could enable users to search, browse, download and carry out efficient online analysis. For instance, users can make prediction of autophagy gene regulators in a context-dependent manner and in a precise subpopulation and tumor subtypes. Also, it is feasible in ATdb to cluster tumors into distinguished groups based on the gene-related long non-coding RNAs to gain novel insights into their potential functional implications. Thus, ATdb offers a powerful online database for the autophagy community to explore the complex world of autophagy and tumor. Database URL: http://www.bigzju.com/ATdb/#/

DOI10.1093/database/baaa052
URLView the original
Indexed BySCIE
Language英語English
WOS Research AreaMathematical & Computational Biology
WOS SubjectMathematical & Computational Biology
WOS IDWOS:000546001700001
PublisherOXFORD UNIV PRESSGREAT CLARENDON ST, OXFORD OX2 6DP, ENGLAND
Scopus ID2-s2.0-85088215426
Fulltext Access
Citation statistics
Document TypeJournal article
CollectionFaculty of Health Sciences
Corresponding AuthorShen,Han Ming; Xia,Dajing; Wu,Yihua
Affiliation1.Department of Toxicology of School of Public Health,Department of Gynecologic Oncology of Women's Hospital,Zhejiang University,School of Medicine,Hangzhou,310058,China
2.Department of Gynecologic Oncology of Women's Hospital,Zhejiang University,School of Medicine,Hangzhou,310058,China
3.Department of Oncology,Second Affiliated Hospital,Zhejiang University,School of Medicine,Hangzhou,310058,China
4.Department of Pathology,Zhejiang University,School of Medicine,Hangzhou,310058,China
5.Sir Run Run Shaw Hospital,School of Medicine,Zhejiang University,Hangzhou,310016,China
6.Department of Thoracic Surgery,The First Affiliated Hospital,Zhejiang University,School of Medicine,Hangzhou,310003,China
7.Epidemiology Stream,Dalla Lana School of Public Health,University of Toronto,M5T 3M7,Canada
8.Department of Physiology,Yong Loo Lin School of Medicine,National University of Singapore,Singapore,117597,Singapore
9.State Key Laboratory for Diagnosis and Treatment of Infectious Diseases,Collaborative Innovation Center for Diagnosis and Treatment of Infectious Disease,The First Affiliated Hospital,Zhejiang University,School of Medicine,Hangzhou,310003,China
10.Second Affiliated Hospital,Zhejiang University,School of Medicine,Hangzhou,310009,China
11.Faculty of Health Sciences,University of Macau,Macao
Corresponding Author AffilicationFaculty of Health Sciences
Recommended Citation
GB/T 7714
Chen,Kelie,Yang,Dexin,Zhao,Fan,et al. Autophagy and Tumor Database: ATdb, a novel database connecting autophagy and tumor[J]. Database-The Journal of Biological Databases and Curation, 2020, 2020, baaa052.
APA Chen,Kelie., Yang,Dexin., Zhao,Fan., Wang,Shengchao., Ye,Yao., Sun,Wenjie., Lu,Haohua., Ruan,Zhi., Xu,Jinming., Wang,Tianru., Lu,Guang., Wang,Liming., Shi,Yu., Zhang,Honghe., Wu,Han., Lu,Weiguo., Shen,Han Ming., Xia,Dajing., & Wu,Yihua (2020). Autophagy and Tumor Database: ATdb, a novel database connecting autophagy and tumor. Database-The Journal of Biological Databases and Curation, 2020, baaa052.
MLA Chen,Kelie,et al."Autophagy and Tumor Database: ATdb, a novel database connecting autophagy and tumor".Database-The Journal of Biological Databases and Curation 2020(2020):baaa052.
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