Residential College | false |
Status | 已發表Published |
PBrowse: a web-based platform for real-time collaborative exploration of genomic data | |
Szot, Peter S.; Yang, Andrian; Wang, Xin; Parsania, Chirag![]() ![]() | |
2017-05-19 | |
Source Publication | NUCLEIC ACIDS RESEARCH
![]() |
ISSN | 0305-1048 |
Volume | 45Issue:9 |
Abstract | Genome browsers are widely used for individually exploring various types of genomic data. A handful of genome browsers offer limited tools for collaboration among multiple users. Here, we describe PBrowse, an integrated real-time collaborative genome browser that enables multiple users to simultaneously viewand access genomic data, thereby harnessing the wisdom of the crowd. PBrowse is based on the Dalliance genome browser and has a re-designed user and data management system with novel collaborative functionalities, including real-time collaborative view, track comment and an integrated group chat feature. Through the Distributed Annotation Server protocol, PBrowse can easily access a wide range of publicly available genomic data, such as the ENCODE data sets. We argue that PBrowse represents a paradigm shift from using a genome browser as a static data visualization tool to a platform that enables real-time human-human interaction and knowledge exchange in a collaborative setting. PBrowse is available at http: //pbrowse.victorchang.edu.au, and its source code is available via an open source BSD 3 license at http://github.com/VCCRI/PBrowse. |
DOI | 10.1093/nar/gkw1358 |
URL | View the original |
Indexed By | SCIE |
Language | 英語English |
WOS Research Area | Biochemistry & Molecular Biology |
WOS Subject | Biochemistry & Molecular Biology |
WOS ID | WOS:000402064200002 |
Publisher | OXFORD UNIV PRESS |
The Source to Article | WOS |
Scopus ID | 2-s2.0-85026894752 |
Fulltext Access | |
Citation statistics | |
Document Type | Journal article |
Collection | Faculty of Health Sciences |
Recommended Citation GB/T 7714 | Szot, Peter S.,Yang, Andrian,Wang, Xin,et al. PBrowse: a web-based platform for real-time collaborative exploration of genomic data[J]. NUCLEIC ACIDS RESEARCH, 2017, 45(9). |
APA | Szot, Peter S.., Yang, Andrian., Wang, Xin., Parsania, Chirag., Rohm, Uwe., Wong, Koon Ho., & Ho, Joshua W. K. (2017). PBrowse: a web-based platform for real-time collaborative exploration of genomic data. NUCLEIC ACIDS RESEARCH, 45(9). |
MLA | Szot, Peter S.,et al."PBrowse: a web-based platform for real-time collaborative exploration of genomic data".NUCLEIC ACIDS RESEARCH 45.9(2017). |
Files in This Item: | There are no files associated with this item. |
Items in the repository are protected by copyright, with all rights reserved, unless otherwise indicated.
Edit Comment