Extensive studies on improving anammox performance have taken place for decades with particular focuses on its operational and environmental factors, but such parameter-based optimization is difficult, because of the sheer number of possible combinations and multidimensional arrays of these factors. Utilizing machine-learning algorithm and published anammox data, Bayesian nonparametric general regression (BNGR) was applied to identify the possible governing variable(s) from among 11 operating and environmental parameters: reactor type, mixing type, working volume, hydraulic retention time, temperature, influent pH, nitrite, ammonium, nitrate concentration, nitrogen loading rate, and organic concentration. The results showed that working volume is a key but oft-overlooked governing parameter. By integrating the BNGR findings with computational fluid dynamics simulation, which assessed mixing properties, it became feasible to conclude that working volume and mixing intensity co-regulated flow fields in reactors and had a significant influence on anammox performance. Furthermore, this study experimentally validated how mixing intensity affected performance, and specific input power (x), a parameter that conjugates both working volume and mixing intensity, was used to establish the relationship with ammonium removal rate (NH₄⁺-N RR, y) y = 49.90x+1.97 (R² = 0.94). With specific input power increased from 3.4 × 10^-4 to 2.6 × 10^-2 kW m^-3, the ammonium removal rate exhibited a rise from 1.8 to 3.2 mg L^-1 h^-1. Following, a relationship among input power-working volume-nitrogen removal rate was also established with a view to determining the design variables for anammox reactor. Consequently, the study highlighted the necessity to consider the working volume-mixing intensity correlation when optimizing the anammox process.