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CHHM: a Manually Curated Catalogue of Human Histone Modifications Revealing Hotspot Regions and Unique Distribution Patterns
Wendong Ma; DING XIAOFAN; Jiajia Xu; Terence Chuen Wai Poon
2024-07
Source PublicationInternational Journal of Biological Sciences
ISSN1449-2288
Volume20Issue:10Pages:3760-3772
Abstract

Histone modification is one of the key elements in epigenetic control and plays important roles in regulation of biological processes and disease development. Currently, records of human histone modifications with various levels of confidence in evidence are scattered in various knowledgebases and databases. In the present study, a curated catalogue of human histone modifications, CHHM, was obtained by manual retrieval, evidence assessment, and integration of modification records from 10 knowledgebases/databases and 3 complementary articles. CHHM contains 6612 nonredundant modification entries covering 31 types of modifications (including 9 types of emerging modifications) and 2 types of histone-DNA crosslinks, that were identified in 11 H1 variants, 21 H2A variants, 21 H2B variants, 9 H3 variants, and 2 H4 variants. For ease of visualization and accessibility, modification entries are presented with aligned protein sequences in an Excel file. Confidence level in evidence is provided for each entry. Acylation modifications contribute to the highest number of modification entries in CHHM. This supports that cellular metabolic status plays a very important role in epigenetic control. CHHM reveals modification hotspot regions and uneven distribution of the modification entries across the histone families. Such uneven distribution may suggest that a particular histone family is more susceptible to certain types of modifications. CHHM not only serves as an important and user-friendly resource for biomedical and clinical researches involving histone modifications and transcriptional regulation, but also provides new insights for basic researches in the mechanism of human histone modifications and epigenetic control.

KeywordCurated Catalogue Of Human Histone Modifications (Chhm) Histone-dna Crosslink Hotspot Region Human Histone Modification Modification Inference
DOI10.7150/ijbs.95954
Indexed BySCIE
Language英語English
WOS Research AreaBiochemistry & Molecular Biology ; Life Sciences & Biomedicine - Other Topics
WOS SubjectBiochemistry & Molecular Biology ; Biology
WOS IDWOS:001272849100005
PublisherIVYSPRING INT PUBL, PO BOX 4546, LAKE HAVEN, NSW 2263, AUSTRALIA
Scopus ID2-s2.0-85200939537
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Citation statistics
Document TypeJournal article
CollectionFaculty of Health Sciences
Centre for Precision Medicine Research and Training
Institute of Translational Medicine
DEPARTMENT OF BIOMEDICAL SCIENCES
Ministry of Education Frontiers Science Center for Precision Oncology, University of Macau
Corresponding AuthorTerence Chuen Wai Poon
AffiliationInstitute of Translational Medicine, Centre for Precision Medicine Research and Training, MoE Frontiers Science Center for Precision Oncology, Faculty of Health Sciences, University of Macau, Macau, 999078, China
First Author AffilicationFaculty of Health Sciences
Corresponding Author AffilicationFaculty of Health Sciences
Recommended Citation
GB/T 7714
Wendong Ma,DING XIAOFAN,Jiajia Xu,et al. CHHM: a Manually Curated Catalogue of Human Histone Modifications Revealing Hotspot Regions and Unique Distribution Patterns[J]. International Journal of Biological Sciences, 2024, 20(10), 3760-3772.
APA Wendong Ma., DING XIAOFAN., Jiajia Xu., & Terence Chuen Wai Poon (2024). CHHM: a Manually Curated Catalogue of Human Histone Modifications Revealing Hotspot Regions and Unique Distribution Patterns. International Journal of Biological Sciences, 20(10), 3760-3772.
MLA Wendong Ma,et al."CHHM: a Manually Curated Catalogue of Human Histone Modifications Revealing Hotspot Regions and Unique Distribution Patterns".International Journal of Biological Sciences 20.10(2024):3760-3772.
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