Residential College | false |
Status | 已發表Published |
Quick-motif: An efficient and scalable framework for exact motif discovery | |
Yuhong Li1; Leong Hou U1; Man Lung Yiu2; Zhiguo Gong1 | |
2015-06-01 | |
Conference Name | International Conference on Data Engineering |
Source Publication | Proceedings - International Conference on Data Engineering |
Volume | 2015-May |
Pages | 579-590 |
Conference Date | 13-17 April 2015 |
Conference Place | Seoul, Korea (South) |
Abstract | Discovering motifs in sequence databases has been receiving abundant attentions from both database and data mining communities, where the motif is the most correlated pair of subsequences in a sequence object. Motif discovery is expensive for emerging applications which may have very long sequences (e.g., million observations per sequence) or the queries arrive rapidly (e.g., per 10 seconds). Prior works cannot offer fast correlation computations and prune subsequence pairs at the same time, as these two techniques require different orderings on examining subsequence pairs. In this work, we propose a novel framework named Quick-Motif which adopts a two-level approach to enable batch pruning at the outer level and enable fast correlation calculation at the inner level. We further propose two optimization techniques for the outer and the inner level. In our experimental study, our method is up to 3 orders of magnitude faster than the state-of-the-art methods. |
DOI | 10.1109/ICDE.2015.7113316 |
URL | View the original |
Indexed By | CPCI-S |
Language | 英語English |
WOS Research Area | Computer Science ; Engineering |
WOS Subject | Computer Science, Information Systems ; Computer Science, Theory & Methods ; Engineering, Electrical & Electronic |
WOS ID | WOS:000519724500051 |
Scopus ID | 2-s2.0-84940881373 |
Fulltext Access | |
Citation statistics | |
Document Type | Conference paper |
Collection | DEPARTMENT OF COMPUTER AND INFORMATION SCIENCE |
Affiliation | 1.Department of Computer and Information Science, University of Macau Av. Padre Tomas Pereira Taipa, Macau 2.Department of Computing, Hong Kong Polytechnic University |
First Author Affilication | University of Macau |
Recommended Citation GB/T 7714 | Yuhong Li,Leong Hou U,Man Lung Yiu,et al. Quick-motif: An efficient and scalable framework for exact motif discovery[C], 2015, 579-590. |
APA | Yuhong Li., Leong Hou U., Man Lung Yiu., & Zhiguo Gong (2015). Quick-motif: An efficient and scalable framework for exact motif discovery. Proceedings - International Conference on Data Engineering, 2015-May, 579-590. |
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