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An inner-outer subcycling algorithm for parallel cardiac electrophysiology simulations
Sebastian Laudenschlager1; Xiao-Chuan Cai2
2022-12-27
Source PublicationInternational Journal for Numerical Methods in Biomedical Engineering
ISSN2040-7939
Volume39Issue:3Pages:e3677
Abstract

This paper explores cardiac electrophysiological simulations of the monodomain equations and introduces a novel subcycling time integration algorithm to exploit the structure of the ionic model. The aim of this work is to improve upon the efficiency of parallel cardiac monodomain simulations by using our subcycling algorithm in the computation of the ionic model to handle the local sharp changes of the solution. This will reduce the turnaround time for the simulation of basic cardiac electrical function on both idealized and patient-specific geometry. Numerical experiments show that the proposed approach is accurate and also has close to linear parallel scalability on a computer with more than 1000 processor cores. Ultimately, the reduction in simulation time can be beneficial in clinical applications, where multiple simulations are often required to tune a model to match clinical measurements.

KeywordCardiac Electrophysiology Finite Element On Unstructured Meshes Parallel Processing Patient-specific Cardiac Geometry Time Integration With Subcycling
DOI10.1002/cnm.3677
URLView the original
Indexed BySCIE
Language英語English
WOS Research AreaEngineering ; Mathematical & Computational Biology ; Mathematics
WOS SubjectEngineering, Biomedical ; Mathematical & Computational Biology ; Mathematics, Interdisciplinary Applications
WOS IDWOS:000911229600001
PublisherWILEY, 111 RIVER ST, HOBOKEN 07030-5774, NJ
Scopus ID2-s2.0-85146062083
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Citation statistics
Document TypeJournal article
CollectionDEPARTMENT OF MATHEMATICS
Faculty of Science and Technology
Corresponding AuthorXiao-Chuan Cai
Affiliation1.Department of Computer Science,University of Colorado Boulder, Boulder,Colorado, USA
2.Department of Mathematics, University of Macau, Macau, China
Corresponding Author AffilicationUniversity of Macau
Recommended Citation
GB/T 7714
Sebastian Laudenschlager,Xiao-Chuan Cai. An inner-outer subcycling algorithm for parallel cardiac electrophysiology simulations[J]. International Journal for Numerical Methods in Biomedical Engineering, 2022, 39(3), e3677.
APA Sebastian Laudenschlager., & Xiao-Chuan Cai (2022). An inner-outer subcycling algorithm for parallel cardiac electrophysiology simulations. International Journal for Numerical Methods in Biomedical Engineering, 39(3), e3677.
MLA Sebastian Laudenschlager,et al."An inner-outer subcycling algorithm for parallel cardiac electrophysiology simulations".International Journal for Numerical Methods in Biomedical Engineering 39.3(2022):e3677.
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